IL_9H3O_040

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9H3O|1|A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3O_040 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.3601

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9H3O|1|A|C|1319
9H3O|1|A|C|1320
9H3O|1|A|A|1321
9H3O|1|A|A|1322
9H3O|1|A|C|1323
*
9H3O|1|A|G|1331
9H3O|1|A|G|1332
9H3O|1|A|G|1333

Current chains

Chain A

23S ribosomal RNA

Nearby chains