3D structure

PDB id
9H3O (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C_(L22)-_GAC
Experimental method
ELECTRON MICROSCOPY
Resolution
4.54 Å

Loop

Sequence
CGAGG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9H3O_042 not in the Motif Atlas
Homologous match to IL_4WF9_052
Geometric discrepancy: 0.3252
The information below is about IL_4WF9_052
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

9H3O|1|A|C|1357
9H3O|1|A|G|1358
9H3O|1|A|A|1359
9H3O|1|A|G|1360
9H3O|1|A|G|1361
*
9H3O|1|A|C|1370
9H3O|1|A|G|1371
9H3O|1|A|U|1372
9H3O|1|A|A|1373
9H3O|1|A|G|1374

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
Large ribosomal subunit protein bL34

Coloring options:


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