IL_9H3O_065

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9H3O|1|A|G|2576, 9H3O|1|A|A|2577

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3O_065 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1497

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

9H3O|1|A|C|2510
9H3O|1|A|U|2511
9H3O|1|A|C|2512
*
9H3O|1|A|G|2574
9H3O|1|A|C|2575
9H3O|1|A|G|2576
9H3O|1|A|A|2577
9H3O|1|A|G|2578

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3