IL_9H3P_064

3D structure

PDB id

9H3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

7.06 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3P_064 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.2427

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9H3P|1|A|C|2466
9H3P|1|A|C|2467
9H3P|1|A|A|2468
9H3P|1|A|A|2469
9H3P|1|A|G|2470
*
9H3P|1|A|C|2480
9H3P|1|A|G|2481
9H3P|1|A|A|2482
9H3P|1|A|C|2483
9H3P|1|A|G|2484

Current chains

Chain A

23S ribosomal RNA

Nearby chains