3D structure

PDB id
9H3Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C-CP_YjgA_(L22)-~H61
Experimental method
ELECTRON MICROSCOPY
Resolution
4.02 Å

Loop

Sequence
CCUGAAUC*GUGAG
Length
13 nucleotides
Bulged bases
9H3Q|1|A|G|277
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9H3Q_009 not in the Motif Atlas
Homologous match to IL_5J7L_253
Geometric discrepancy: 0.3965
The information below is about IL_5J7L_253
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

9H3Q|1|A|C|274
9H3Q|1|A|C|275
9H3Q|1|A|U|276
9H3Q|1|A|G|277
9H3Q|1|A|A|278
9H3Q|1|A|A|279
9H3Q|1|A|U|280
9H3Q|1|A|C|281
*
9H3Q|1|A|G|359
9H3Q|1|A|U|360
9H3Q|1|A|G|361
9H3Q|1|A|A|362
9H3Q|1|A|G|363

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1208 s