IL_9H3Q_039

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC

Length

40 nucleotides

Bulged bases

9H3Q|1|A|U|1061, 9H3Q|1|A|U|1065, 9H3Q|1|A|U|1066, 9H3Q|1|A|A|1067, 9H3Q|1|A|G|1068, 9H3Q|1|A|A|1069, 9H3Q|1|A|A|1070, 9H3Q|1|A|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3Q|1|A|G|1055
9H3Q|1|A|G|1056
9H3Q|1|A|A|1057
9H3Q|1|A|U|1058
9H3Q|1|A|G|1059
9H3Q|1|A|U|1060
9H3Q|1|A|U|1061
9H3Q|1|A|G|1062
9H3Q|1|A|G|1063
9H3Q|1|A|C|1064
9H3Q|1|A|U|1065
9H3Q|1|A|U|1066
9H3Q|1|A|A|1067
9H3Q|1|A|G|1068
9H3Q|1|A|A|1069
9H3Q|1|A|A|1070
9H3Q|1|A|G|1071
9H3Q|1|A|C|1072
9H3Q|1|A|A|1073
9H3Q|1|A|G|1074
9H3Q|1|A|C|1075
9H3Q|1|A|C|1076
9H3Q|1|A|A|1077
9H3Q|1|A|U|1078
9H3Q|1|A|C|1079
9H3Q|1|A|A|1080
9H3Q|1|A|U|1081
9H3Q|1|A|U|1082
9H3Q|1|A|U|1083
9H3Q|1|A|A|1084
9H3Q|1|A|A|1085
9H3Q|1|A|A|1086
9H3Q|1|A|G|1087
9H3Q|1|A|A|1088
9H3Q|1|A|A|1089
9H3Q|1|A|A|1090
*
9H3Q|1|A|U|1101
9H3Q|1|A|C|1102
9H3Q|1|A|A|1103
9H3Q|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A