IL_9H3R_026

3D structure

PDB id

9H3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

9H3R|1|A|A|910, 9H3R|1|A|A|911

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3R_026 not in the Motif Atlas

Homologous match to IL_4WF9_033

Geometric discrepancy: 0.2331

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9H3R|1|A|G|864
9H3R|1|A|C|865
9H3R|1|A|A|866
9H3R|1|A|C|867
9H3R|1|A|U|868
*
9H3R|1|A|A|909
9H3R|1|A|A|910
9H3R|1|A|A|911
9H3R|1|A|C|912

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA