IL_9H3R_058

3D structure

PDB id

9H3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3R_058 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3658

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9H3R|1|A|U|1720
9H3R|1|A|G|1721
9H3R|1|A|A|1722
9H3R|1|A|G|1723
9H3R|1|A|G|1724
9H3R|1|A|U|1725
*
9H3R|1|A|A|1735
9H3R|1|A|U|1736
9H3R|1|A|G|1737
9H3R|1|A|G|1738
9H3R|1|A|A|1739
9H3R|1|A|G|1740

Current chains

Chain A

23S ribosomal RNA

Nearby chains