IL_9H3R_086

3D structure

PDB id

9H3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9H3R|1|A|A|2765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3R_086 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1932

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9H3R|1|A|G|2737
9H3R|1|A|A|2738
9H3R|1|A|U|2739
9H3R|1|A|A|2740
9H3R|1|A|A|2741
9H3R|1|A|G|2742
*
9H3R|1|A|C|2762
9H3R|1|A|G|2763
9H3R|1|A|A|2764
9H3R|1|A|A|2765
9H3R|1|A|A|2766
9H3R|1|A|C|2767

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13