IL_9H3S_026

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_026 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.1185

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9H3S|1|A|G|856
9H3S|1|A|G|857
9H3S|1|A|G|858
9H3S|1|A|G|859
9H3S|1|A|U|860
9H3S|1|A|A|861
9H3S|1|A|G|862
*
9H3S|1|A|C|915
9H3S|1|A|G|916
9H3S|1|A|A|917
9H3S|1|A|A|918
9H3S|1|A|U|919
9H3S|1|A|A|920
9H3S|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain W

Large ribosomal subunit protein bL27

Chain Z

Large ribosomal subunit protein uL30