IL_9H3S_037

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9H3S|1|A|U|1033

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_037 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.1963

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9H3S|1|A|G|1031
9H3S|1|A|A|1032
9H3S|1|A|U|1033
9H3S|1|A|G|1034
*
9H3S|1|A|C|1121
9H3S|1|A|G|1122
9H3S|1|A|C|1123

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain B

5S ribosomal RNA; 5S rRNA