3D structure

PDB id
9H3S (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C-CP_YjgA_L22
Experimental method
ELECTRON MICROSCOPY
Resolution
4.16 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
9H3S|1|A|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9H3S_039 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.3022
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

9H3S|1|A|C|1043
9H3S|1|A|C|1044
9H3S|1|A|C|1045
9H3S|1|A|A|1046
9H3S|1|A|G|1047
9H3S|1|A|A|1048
9H3S|1|A|C|1049
9H3S|1|A|A|1050
9H3S|1|A|G|1051
*
9H3S|1|A|U|1108
9H3S|1|A|C|1109
9H3S|1|A|G|1110
9H3S|1|A|A|1111
9H3S|1|A|G|1112

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain G
Large ribosomal subunit protein uL6

Coloring options:


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