IL_9H3S_071

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

9H3S|1|A|A|2439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_071 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.1561

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9H3S|1|A|A|2070
9H3S|1|A|A|2071
*
9H3S|1|A|U|2438
9H3S|1|A|A|2439
9H3S|1|A|C|2440
9H3S|1|A|U|2441

Current chains

Chain A

23S ribosomal RNA

Nearby chains