IL_9H3S_092

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3S_092 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1574

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9H3S|1|A|C|2652
9H3S|1|A|U|2653
9H3S|1|A|A|2654
9H3S|1|A|G|2655
9H3S|1|A|U|2656
9H3S|1|A|A|2657
9H3S|1|A|C|2658
*
9H3S|1|A|G|2663
9H3S|1|A|G|2664
9H3S|1|A|A|2665
9H3S|1|A|C|2666
9H3S|1|A|C|2667
9H3S|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6