IL_9H3T_006

3D structure

PDB id

9H3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_L2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.85 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3T_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1421

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9H3T|1|A|G|188
9H3T|1|A|G|189
9H3T|1|A|A|190
9H3T|1|A|A|191
9H3T|1|A|C|192
9H3T|1|A|U|193
9H3T|1|A|G|194
*
9H3T|1|A|C|201
9H3T|1|A|U|202
9H3T|1|A|A|203
9H3T|1|A|A|204
9H3T|1|A|G|205
9H3T|1|A|U|206
9H3T|1|A|A|207
9H3T|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28