IL_9H3T_049

3D structure

PDB id

9H3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_L2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.85 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3T_049 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.1503

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9H3T|1|A|C|1526
9H3T|1|A|G|1527
9H3T|1|A|A|1528
9H3T|1|A|G|1529
*
9H3T|1|A|U|1542
9H3T|1|A|G|1543
9H3T|1|A|A|1544
9H3T|1|A|A|1545
9H3T|1|A|G|1546

Current chains

Chain A

23S ribosomal RNA

Nearby chains