IL_9H3U_016

3D structure

PDB id

9H3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9H3U|1|A|G|801, 9H3U|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3U_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1512

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9H3U|1|A|G|674
9H3U|1|A|A|675
9H3U|1|A|A|676
9H3U|1|A|A|677
9H3U|1|A|C|678
*
9H3U|1|A|G|799
9H3U|1|A|A|800
9H3U|1|A|G|801
9H3U|1|A|A|802
9H3U|1|A|U|803
9H3U|1|A|A|804
9H3U|1|A|G|805
9H3U|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15