IL_9H3V_074

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

9H3V|1|A|C|2164, 9H3V|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3V_074 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.5591

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

9H3V|1|A|G|2124
9H3V|1|A|G|2125
9H3V|1|A|A|2126
9H3V|1|A|G|2127
9H3V|1|A|G|2128
*
9H3V|1|A|C|2160
9H3V|1|A|C|2161
9H3V|1|A|G|2162
9H3V|1|A|A|2163
9H3V|1|A|C|2164
9H3V|1|A|C|2165
9H3V|1|A|U|2166
9H3V|1|A|U|2167
9H3V|1|A|G|2168
9H3V|1|A|A|2169
9H3V|1|A|A|2170
9H3V|1|A|A|2171
9H3V|1|A|U|2172
9H3V|1|A|A|2173
9H3V|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains