IL_9H3V_081

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9H3V|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3V_081 not in the Motif Atlas

Homologous match to IL_7A0S_093

Geometric discrepancy: 0.1502

The information below is about IL_7A0S_093

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9H3V|1|A|C|2636
9H3V|1|A|U|2637
9H3V|1|A|G|2638
9H3V|1|A|A|2639
9H3V|1|A|G|2640
*
9H3V|1|A|C|2774
9H3V|1|A|G|2775
9H3V|1|A|A|2776
9H3V|1|A|G|2777
9H3V|1|A|A|2778
9H3V|1|A|U|2779
9H3V|1|A|G|2780
9H3V|1|A|A|2781
9H3V|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13