IL_9H3V_082

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3V_082 not in the Motif Atlas

Geometric match to IL_5J7L_391

Geometric discrepancy: 0.2299

The information below is about IL_5J7L_391

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9H3V|1|A|G|2642
9H3V|1|A|G|2643
9H3V|1|A|G|2644
*
9H3V|1|A|C|2771
9H3V|1|A|C|2772

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13