IL_9H3W_009

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

9H3W|1|A|U|276

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.26

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9H3W|1|A|C|274
9H3W|1|A|C|275
9H3W|1|A|U|276
9H3W|1|A|G|277
9H3W|1|A|A|278
9H3W|1|A|A|279
9H3W|1|A|U|280
9H3W|1|A|C|281
*
9H3W|1|A|G|359
9H3W|1|A|U|360
9H3W|1|A|G|361
9H3W|1|A|A|362
9H3W|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains