IL_9H3W_014

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_014 not in the Motif Atlas

Homologous match to IL_7A0S_013

Geometric discrepancy: 0.2382

The information below is about IL_7A0S_013

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9H3W|1|A|U|606
9H3W|1|A|U|607
9H3W|1|A|A|608
9H3W|1|A|A|609
9H3W|1|A|C|610
*
9H3W|1|A|G|618
9H3W|1|A|G|619
9H3W|1|A|G|620
9H3W|1|A|A|621
9H3W|1|A|G|622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15