IL_9H3W_042

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9H3W|1|A|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_042 not in the Motif Atlas

Homologous match to IL_9DFE_046

Geometric discrepancy: 0.1639

The information below is about IL_9DFE_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

9H3W|1|A|C|1208
9H3W|1|A|U|1209
9H3W|1|A|G|1210
9H3W|1|A|C|1211
9H3W|1|A|G|1212
9H3W|1|A|A|1213
9H3W|1|A|A|1214
9H3W|1|A|G|1215
*
9H3W|1|A|U|1234
9H3W|1|A|G|1235
9H3W|1|A|G|1236
9H3W|1|A|A|1237
9H3W|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20