IL_9H3W_043

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_043 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.2264

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9H3W|1|A|A|1262
9H3W|1|A|U|1263
9H3W|1|A|A|1264
9H3W|1|A|A|1265
9H3W|1|A|G|1266
9H3W|1|A|U|1267
9H3W|1|A|A|1268
9H3W|1|A|A|1269
*
9H3W|1|A|U|2011
9H3W|1|A|G|2012
9H3W|1|A|A|2013
9H3W|1|A|A|2014
9H3W|1|A|A|2015
9H3W|1|A|U|2016
9H3W|1|A|U|2017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain S

Large ribosomal subunit protein uL22