IL_9H3W_064

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9H3W|1|A|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_064 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1297

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9H3W|1|A|C|1686
9H3W|1|A|G|1687
9H3W|1|A|U|1688
9H3W|1|A|A|1689
9H3W|1|A|A|1690
9H3W|1|A|C|1691
*
9H3W|1|A|G|1696
9H3W|1|A|G|1697
9H3W|1|A|A|1698
9H3W|1|A|G|1699
9H3W|1|A|A|1700
9H3W|1|A|A|1701
9H3W|1|A|G|1702

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2