IL_9H3W_070

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9H3W|1|A|A|1899, 9H3W|1|A|A|1900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_070 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.2521

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9H3W|1|A|U|1841
9H3W|1|A|G|1842
*
9H3W|1|A|U|1898
9H3W|1|A|A|1899
9H3W|1|A|A|1900
9H3W|1|A|A|1901

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2