IL_9H3W_073

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3W_073 not in the Motif Atlas

Homologous match to IL_4WF9_075

Geometric discrepancy: 0.2694

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.6

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9H3W|1|A|U|1864
9H3W|1|A|U|1865
9H3W|1|A|A|1866
9H3W|1|A|G|1867
*
9H3W|1|A|C|1874
9H3W|1|A|G|1875
9H3W|1|A|A|1876
9H3W|1|A|A|1877
9H3W|1|A|G|1878

Current chains

Chain A

23S ribosomal RNA

Nearby chains