IL_9H3X_015

3D structure

PDB id

9H3X (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68_L35

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3X_015 not in the Motif Atlas

Homologous match to IL_4WF9_020

Geometric discrepancy: 0.1457

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9H3X|1|A|C|672
9H3X|1|A|C|673
9H3X|1|A|G|674
*
9H3X|1|A|C|806
9H3X|1|A|U|807
9H3X|1|A|G|808

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15