IL_9H3X_070

3D structure

PDB id

9H3X (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68_L35

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3X_070 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.2095

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9H3X|1|A|U|1851
9H3X|1|A|U|1852
9H3X|1|A|A|1853
9H3X|1|A|A|1854
9H3X|1|A|U|1855
9H3X|1|A|U|1856
9H3X|1|A|G|1857
9H3X|1|A|A|1858
9H3X|1|A|U|1859
9H3X|1|A|G|1860
*
9H3X|1|A|U|1882
9H3X|1|A|U|1883
9H3X|1|A|G|1884
9H3X|1|A|A|1885
9H3X|1|A|U|1886
9H3X|1|A|C|1887
9H3X|1|A|G|1888
9H3X|1|A|A|1889
9H3X|1|A|A|1890
9H3X|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains