IL_9H3X_080

3D structure

PDB id

9H3X (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68_L35

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

9H3X|1|A|U|2111, 9H3X|1|A|G|2112, 9H3X|1|A|G|2116, 9H3X|1|A|A|2117, 9H3X|1|A|U|2118, 9H3X|1|A|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3X_080 not in the Motif Atlas

Geometric match to IL_8C3A_142

Geometric discrepancy: 0.269

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

9H3X|1|A|G|2110
9H3X|1|A|U|2111
9H3X|1|A|G|2112
9H3X|1|A|U|2113
9H3X|1|A|A|2114
9H3X|1|A|G|2115
9H3X|1|A|G|2116
9H3X|1|A|A|2117
9H3X|1|A|U|2118
9H3X|1|A|A|2119
9H3X|1|A|G|2120
*
9H3X|1|A|C|2178
9H3X|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains