IL_9H3Y_068

3D structure

PDB id

9H3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor 50S_(L16)-

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9H3Y|1|A|A|1801, 9H3Y|1|A|C|1816, 9H3Y|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Y_068 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1497

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9H3Y|1|A|U|1798
9H3Y|1|A|G|1799
9H3Y|1|A|C|1800
9H3Y|1|A|A|1801
9H3Y|1|A|A|1802
9H3Y|1|A|A|1803
9H3Y|1|A|C|1804
*
9H3Y|1|A|G|1813
9H3Y|1|A|G|1814
9H3Y|1|A|A|1815
9H3Y|1|A|C|1816
9H3Y|1|A|G|1817
9H3Y|1|A|U|1818
9H3Y|1|A|A|1819
9H3Y|1|A|U|1820
9H3Y|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2