IL_9H51_045

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H51_045 not in the Motif Atlas

Geometric match to IL_8CRE_475

Geometric discrepancy: 0.245

The information below is about IL_8CRE_475

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9H51|1|A|A|1507
9H51|1|A|C|1508
9H51|1|A|U|1509
9H51|1|A|U|1510
*
9H51|1|A|A|1540
9H51|1|A|U|1541
9H51|1|A|U|1542
9H51|1|A|U|1543

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain c

Pseudouridylate synthase 1 homolog