IL_9H52_028

3D structure

PDB id

9H52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CG*UCAAG

Length

7 nucleotides

Bulged bases

9H52|1|A|C|1330, 9H52|1|A|A|1331, 9H52|1|A|A|1332

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H52_028 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.2295

The information below is about IL_4YAZ_007

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9H52|1|A|C|1262
9H52|1|A|G|1263
*
9H52|1|A|U|1329
9H52|1|A|C|1330
9H52|1|A|A|1331
9H52|1|A|A|1332
9H52|1|A|G|1333

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain C

28S ribosomal protein S24, mitochondrial