IL_9H6I_025

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUAAGC*GAGACG

Length

13 nucleotides

Bulged bases

9H6I|1|A|C|522, 9H6I|1|A|U|523, 9H6I|1|A|G|552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|C|521
9H6I|1|A|C|522
9H6I|1|A|U|523
9H6I|1|A|A|524
9H6I|1|A|A|525
9H6I|1|A|G|526
9H6I|1|A|C|527
*
9H6I|1|A|G|550
9H6I|1|A|A|551
9H6I|1|A|G|552
9H6I|1|A|A|553
9H6I|1|A|C|554
9H6I|1|A|G|555

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AH

Large ribosomal subunit protein eL14y

Chain AL

Ribosomal protein L18ae/LX family protein

Chain BR

Ribosomal protein L30/L7 family protein

Chain BT

Large ribosomal subunit protein uL4z