IL_9H6I_033

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUGAU*AGAAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|C|766
9H6I|1|A|U|767
9H6I|1|A|U|768
9H6I|1|A|G|769
9H6I|1|A|A|770
9H6I|1|A|U|771
*
9H6I|1|A|A|778
9H6I|1|A|G|779
9H6I|1|A|A|780
9H6I|1|A|A|781
9H6I|1|A|G|782
9H6I|1|A|G|783

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AG

Large ribosomal subunit protein eL13z

Chain AR

60S ribosomal protein L29

Chain BD

Large ribosomal subunit protein eL42z/eL42y

Chain Ha

Large ribosomal subunit protein uL15x