IL_9H6I_035

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMG)A(A2M)AG*CUAGU(A2M)GC

Length

13 nucleotides

Bulged bases

9H6I|1|A|A|942, 9H6I|1|A|G|946

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|OMG|814
9H6I|1|A|A|815
9H6I|1|A|A2M|816
9H6I|1|A|A|817
9H6I|1|A|G|818
*
9H6I|1|A|C|940
9H6I|1|A|U|941
9H6I|1|A|A|942
9H6I|1|A|G|943
9H6I|1|A|U|944
9H6I|1|A|A2M|945
9H6I|1|A|G|946
9H6I|1|A|C|947

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AG

Large ribosomal subunit protein eL13z

Chain AY

Large ribosomal subunit protein eL37z

Chain BT

Large ribosomal subunit protein uL4z

Chain Ea

Large ribosomal subunit protein eL15z

Chain Ha

Large ribosomal subunit protein uL15x