IL_9H6I_037

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUAAAG*UGGAAGC

Length

13 nucleotides

Bulged bases

9H6I|1|A|G|869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|G|842
9H6I|1|A|U|843
9H6I|1|A|A|844
9H6I|1|A|A|845
9H6I|1|A|A|846
9H6I|1|A|G|847
*
9H6I|1|A|U|864
9H6I|1|A|G|865
9H6I|1|A|G|866
9H6I|1|A|A|867
9H6I|1|A|A|868
9H6I|1|A|G|869
9H6I|1|A|C|870

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AK

Large ribosomal subunit protein eL19x

Chain BE

Large ribosomal subunit protein eL43y

Chain BQ

Large ribosomal subunit protein uL2z