IL_9H6I_047

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCCAA(PSU)*AAAC

Length

10 nucleotides

Bulged bases

9H6I|1|A|C|1012

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|G|1010
9H6I|1|A|C|1011
9H6I|1|A|C|1012
9H6I|1|A|A|1013
9H6I|1|A|A|1014
9H6I|1|A|PSU|1015
*
9H6I|1|A|A|1056
9H6I|1|A|A|1057
9H6I|1|A|A|1058
9H6I|1|A|C|1059

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AM

Large ribosomal subunit protein eL21z/eL21y

Chain BJ

Large ribosomal subunit protein uL16y

Chain BK

Large ribosomal subunit protein uL18z

Chain C3

5S ribosomal RNA; 5S rRNA