IL_9H6I_048

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUUA*UUC(PSU)

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|A|1017
9H6I|1|A|U|1018
9H6I|1|A|U|1019
9H6I|1|A|A|1020
*
9H6I|1|A|U|1051
9H6I|1|A|U|1052
9H6I|1|A|C|1053
9H6I|1|A|PSU|1054

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain BJ

Large ribosomal subunit protein uL16y

Chain BK

Large ribosomal subunit protein uL18z

Chain C3

5S ribosomal RNA; 5S rRNA