IL_9H6I_050

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAUUG*CGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|G|1024
9H6I|1|A|C|1025
9H6I|1|A|A|1026
9H6I|1|A|U|1027
9H6I|1|A|U|1028
9H6I|1|A|G|1029
*
9H6I|1|A|C|1044
9H6I|1|A|G|1045
9H6I|1|A|A|1046
9H6I|1|A|C|1047

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain BJ

Large ribosomal subunit protein uL16y

Chain BU

Large ribosomal subunit protein uL5z