IL_9H6I_058
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUAACCUAG*CUUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9H6I|1|A|C|1200, 9H6I|1|A|C|1201, 9H6I|1|A|U|1202, 9H6I|1|A|U|1326, 9H6I|1|A|A|1328
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|C|1196
9H6I|1|A|U|1197
9H6I|1|A|A|1198
9H6I|1|A|A|1199
9H6I|1|A|C|1200
9H6I|1|A|C|1201
9H6I|1|A|U|1202
9H6I|1|A|A|1203
9H6I|1|A|G|1204
*
9H6I|1|A|C|1324
9H6I|1|A|U|1325
9H6I|1|A|U|1326
9H6I|1|A|A|1327
9H6I|1|A|A|1328
9H6I|1|A|G|1329
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AH
- Large ribosomal subunit protein eL14y
- Chain AL
- Ribosomal protein L18ae/LX family protein
- Chain BH
- Large ribosomal subunit protein uL13y
- Chain Ga
- Ubiquitin-ribosomal protein eL40z fusion protein
- Chain Ia
- Large ribosomal subunit protein uL6z/uL6y
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