IL_9H6I_083

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGGAAAC*GGAGGUA

Length

14 nucleotides

Bulged bases

9H6I|1|A|A|1717, 9H6I|1|A|A|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|U|1712
9H6I|1|A|G|1713
9H6I|1|A|G|1714
9H6I|1|A|A|1715
9H6I|1|A|A|1716
9H6I|1|A|A|1717
9H6I|1|A|C|1718
*
9H6I|1|A|G|1728
9H6I|1|A|G|1729
9H6I|1|A|A|1730
9H6I|1|A|G|1731
9H6I|1|A|G|1732
9H6I|1|A|U|1733
9H6I|1|A|A|1734

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AK

Large ribosomal subunit protein eL19x

Chain AP

Large ribosomal subunit protein eL27x

Chain AT

Large ribosomal subunit protein eL30y

Chain BE

Large ribosomal subunit protein eL43y

Chain Da

Small ribosomal subunit protein uS15y