IL_9H6I_087

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

9H6I|1|A|G|2333

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|G|1900
9H6I|1|A|G|1901
9H6I|1|A|A|1902
9H6I|1|A|A|1903
9H6I|1|A|G|1904
9H6I|1|A|U|1905
9H6I|1|A|C|1906
9H6I|1|A|G|1907
9H6I|1|A|G|1908
*
9H6I|1|A|C|2331
9H6I|1|A|U|2332
9H6I|1|A|G|2333
9H6I|1|A|U|2334
9H6I|1|A|OMC|2335

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain BI

Large ribosomal subunit protein uL14x/uL14z/uL14y

Chain BS

Large ribosomal subunit protein uL3z