IL_9H6I_129

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|A|C|3016
9H6I|1|A|C|3017
9H6I|1|A|U|3018
9H6I|1|A|A|3019
9H6I|1|A|G|3020
9H6I|1|A|U|3021
9H6I|1|A|A|3022
9H6I|1|A|C|3023
*
9H6I|1|A|G|3028
9H6I|1|A|G|3029
9H6I|1|A|A|3030
9H6I|1|A|A|3031
9H6I|1|A|C|3032
9H6I|1|A|C|3033
9H6I|1|A|G|3034

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain BI

Large ribosomal subunit protein uL14x/uL14z/uL14y

Chain BS

Large ribosomal subunit protein uL3z

Chain Ga

Ubiquitin-ribosomal protein eL40z fusion protein

Chain Ia

Large ribosomal subunit protein uL6z/uL6y