IL_9H6I_136
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCUCAGUAG*CCAAAG
- Length
- 15 nucleotides
- Bulged bases
- 9H6I|1|A|C|3174, 9H6I|1|A|A|3180, 9H6I|1|A|A|3195, 9H6I|1|A|A|3197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|C|3173
9H6I|1|A|C|3174
9H6I|1|A|U|3175
9H6I|1|A|C|3176
9H6I|1|A|A|3177
9H6I|1|A|G|3178
9H6I|1|A|U|3179
9H6I|1|A|A|3180
9H6I|1|A|G|3181
*
9H6I|1|A|C|3193
9H6I|1|A|C|3194
9H6I|1|A|A|3195
9H6I|1|A|A|3196
9H6I|1|A|A|3197
9H6I|1|A|G|3198
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AH
- Large ribosomal subunit protein eL14y
- Chain AL
- Ribosomal protein L18ae/LX family protein
- Chain AW
- Large ribosomal subunit protein eL33y
- Chain BF
- Large ribosomal subunit protein eL6y
- Chain BH
- Large ribosomal subunit protein uL13y
- Chain Ia
- Large ribosomal subunit protein uL6z/uL6y
Coloring options: