IL_9H6I_153
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUG*CU
- Length
- 5 nucleotides
- Bulged bases
- 9H6I|1|C3|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H6I_153 not in the Motif Atlas
- Homologous match to IL_4V9F_107
- Geometric discrepancy: 0.4314
- The information below is about IL_4V9F_107
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 149
Unit IDs
9H6I|1|C3|A|83
9H6I|1|C3|U|84
9H6I|1|C3|G|85
*
9H6I|1|C3|C|92
9H6I|1|C3|U|93
Current chains
- Chain C3
- Ribosomal RNA 5S
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL
- Ribosomal protein L18ae/LX family protein
- Chain BJ
- Large ribosomal subunit protein uL16y
- Chain BR
- Ribosomal protein L30/L7 family protein
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