IL_9H6I_173

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUCAA*UGGUAACG

Length

14 nucleotides

Bulged bases

9H6I|1|h1|U|315, 9H6I|1|h1|U|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|U|313
9H6I|1|h1|A|314
9H6I|1|h1|U|315
9H6I|1|h1|C|316
9H6I|1|h1|A|317
9H6I|1|h1|A|318
*
9H6I|1|h1|U|350
9H6I|1|h1|G|351
9H6I|1|h1|G|352
9H6I|1|h1|U|353
9H6I|1|h1|A|354
9H6I|1|h1|A|355
9H6I|1|h1|C|356
9H6I|1|h1|G|357

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Aa

Small ribosomal subunit protein eS8z

Chain Va

Small ribosomal subunit protein uS12y

Chain Xa

Small ribosomal subunit protein uS17z