IL_9H6I_179

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAA(PSU)C*GGAG

Length

10 nucleotides

Bulged bases

9H6I|1|h1|G|461

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|C|445
9H6I|1|h1|C|446
9H6I|1|h1|A|447
9H6I|1|h1|A|448
9H6I|1|h1|PSU|449
9H6I|1|h1|C|450
*
9H6I|1|h1|G|460
9H6I|1|h1|G|461
9H6I|1|h1|A|462
9H6I|1|h1|G|463

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AB

Small ribosomal subunit protein uS4y

Chain Ja

Small ribosomal subunit protein eS4x

Chain Ka

Small ribosomal subunit protein eS24y