IL_9H6I_186

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AA(PSU)UC

Length

16 nucleotides

Bulged bases

9H6I|1|h1|A|581, 9H6I|1|h1|PSU|583, 9H6I|1|h1|U|584

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|G|564
9H6I|1|h1|U|565
9H6I|1|h1|G|566
9H6I|1|h1|C|567
9H6I|1|h1|C|568
9H6I|1|h1|A|569
9H6I|1|h1|G|570
*
9H6I|1|h1|C|577
9H6I|1|h1|G|578
9H6I|1|h1|G|579
9H6I|1|h1|OMU|580
9H6I|1|h1|A|581
9H6I|1|h1|A|582
9H6I|1|h1|PSU|583
9H6I|1|h1|U|584
9H6I|1|h1|C|585

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain AA

Small ribosomal subunit protein uS3z

Chain B1

Messenger RNA (poly-U)

Chain Pa

Small ribosomal subunit protein eS30z/eS30y/eS30x

Chain Va

Small ribosomal subunit protein uS12y