IL_9H6I_193

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGAAA(PSU)(PSU)*(A2M)CAUU(A2M)GC

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|G|754
9H6I|1|h1|A|755
9H6I|1|h1|A|756
9H6I|1|h1|G|757
9H6I|1|h1|A|758
9H6I|1|h1|A|759
9H6I|1|h1|A|760
9H6I|1|h1|PSU|761
9H6I|1|h1|PSU|762
*
9H6I|1|h1|A2M|794
9H6I|1|h1|C|795
9H6I|1|h1|A|796
9H6I|1|h1|U|797
9H6I|1|h1|U|798
9H6I|1|h1|A2M|799
9H6I|1|h1|G|800
9H6I|1|h1|C|801

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AB

Small ribosomal subunit protein uS4y

Chain AE

Small ribosomal subunit protein uS8z/uS8w

Chain Ja

Small ribosomal subunit protein eS4x

Chain Xa

Small ribosomal subunit protein uS17z